Publications
The emerging landscape of single-molecule protein sequencing technologies
Javier Antonio Alfaro†*, Peggy Bohländer†, Mingjie Dai†, Mike Filius†, Cecil J. Howard†, Xander F. van Kooten†, Shilo Ohayon†, Adam Pomorski†, Sonja Schmid†, Aleksei Aksimentiev, Eric V. Anslyn, Georges Bedran, Chan Cao, Mauro Chinappi, Etienne Coyaud, Cees Dekker, Gunnar Dittmar, Nicholas Drachman, Rienk Eelkema, David Goodlett, Sébastien Hentz, Umesh Kalathiya, Neil L. Kelleher, Ryan T. Kelly, Zvi Kelman, Sung Hyun Kim, Bernhard Kuster, David Rodriguez-Larrea, Stuart Lindsay, Giovanni Maglia, Edward M. Marcotte, John P. Marino, Christophe Masselon, Michael Mayer, Patroklos Samaras, Kumar Sarthak, Lusia Sepiashvili, Derek Stein, Meni Wanunu, Mathias Wilhelm, Peng Yin, Amit Meller* and Chirlmin Joo*
Nature Methods
18, 604-617
 (
2021
), published on 
Jun 7, 2021
 DOI: 
10.1038/s41592-021-01143-1
  
  
One-Seq: A Highly Scalable Sequencing-Based Diagnostic for SARS-CoV-2 and Other Single-Stranded Viruses
Mingjie Dai*, Wenzhe Ma, Hong Kang, Matthew Sonnett, George M Church*, Marc W Kirschner*
medRxiv
 (
2021
), published on 
Apr 14, 2021
 DOI: 
10.1101/2021.04.12.21253357
  
  
Super-resolution labelling with Action-PAINT
Ninning Liu†, Mingjie Dai†*, Sinem K Saka, Peng Yin*
Nature Chemistry
11, 1001–1008
 (
2019
), published on 
Sep 16, 2019
 DOI: 
10.1038/s41557-019-0325-7
  
  
Rotation tracking of genome-processing enzymes using DNA origami rotors
Pallav Kosuri†, Benjamin D Altheimer†, Mingjie Dai, Peng Yin, Xiaowei Zhuang
Nature
572, 136–140
 (
2019
), published on 
Jul 17, 2019
 DOI: 
10.1038/s41586-019-1397-7
  
  
Super‐resolution Geometric Barcoding for Multiplexed miRNA Profiling
Weidong Xu, Peng Yin*, Mingjie Dai*
Angew. Chemie
130, 14271-75
 (
2018
), published on 
Sep 5, 2018
 DOI: 
https://doi.org/10.1002/ange.201807956
  
  
Single-stranded DNA and RNA origami
Dongran Han†, Xiaodong Qi†, Cameron Myhrvold, Bei Wang, Mingjie Dai, Shuoxing Jiang, Maxwell Bates, Yan Liu, Byoungkwon An*, Fei Zhang*, Hao Yan*, Peng Yin*
Science
358, 6369
 (
2017
), published on 
Dec 15, 2017
 DOI: 
10.1126/science.aao2648
  
  
Rapid sequential in situ multiplexing with DNA exchange imaging in neuronal cells and tissues
Yu Wang, Johannes B. Woehrstein, Noah Donoghue, Mingjie Dai, Maier S. Avendaño, Ron C. J. Schackmann, Jason J. Zoeller, Shan Shan H. Wang, Paul W. Tillberg, Demian Park, Sylvain W. Lapan, Edward S. Boyden, Joan S. Brugge, Pascal S. Kaeser, George M. Church, Sarit S. Agasti*, Ralf Jungmann*, and Peng Yin*
Nano Letters
17, 6131-6139
 (
2017
), published on 
Sep 21, 2017
 DOI: 
10.1021/acs.nanolett.7b02716
  
  
Study of electronic interactions and photo-induced electron transfer dynamics in a metalloconjugated polymer–single-walled carbon nanotube hybrid by ultrafast transient absorption spectroscopy
Haiting Shi†, Lili Du†, Wenjuan Xiong, Mingjie Dai, Wai Kin Chan* and David Lee Phillips*
Journal of Materials Chemistry A
35, 18527-18534
 (
2017
), published on 
Aug 17, 2017
 DOI: 
10.1039/C7TA02753B
  
  
Reconfigurable three-dimensional gold nanorod plasmonic nanostructures organized on DNA origami tripod
Pengfei Zhan†, Palash K. Dutta†, Pengfei Wang†, Gang Song, Mingjie Dai, Shu-Xia Zhao, Zhen-Gang Wang†, Peng Yin, Wei Zhang*, Baoquan Ding* and Yonggang Ke*
ACS Nano
11, 1172-1179
 (
2017
), published on 
Jan 5, 2017
 DOI: 
10.1021/acsnano.6b06861
  
  
DNA-PAINT super-resolution imaging for nucleic acid nanostructures
Mingjie Dai
Springer New York
358, 185–202
 (
2016
), published on 
Nov 4, 2016
 DOI: 
10.1007/978-1-4939-6454-3_13
  
  
Optical imaging of individual biomolecules in densely packed clusters
Mingjie Dai, Ralf Jungmann, Peng Yin
Nature Nanotech.
11, 798-807
 (
2016
), published on 
Jul 4, 2016
 DOI: 
10.1038/nnano.2016.95
  
  
Quantitative super-resolution imaging with qPAINT
Ralf Jungmann†, Maier S Avendaño†, Mingjie Dai, Johannes B Woehrstein, Sarit S Agasti, Zachary Feiger, Avital Rodal, Peng Yin
Nature Methods
13, 439-442
 (
2016
), published on 
Mar 28, 2016
 DOI: 
10.1038/nmeth.3804
  
  
Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT
Ralf Jungmann†, Maier S Avendaño†, Johannes B Woehrstein†, Mingjie Dai, William M Shih & Peng Yin
Nature Methods
11, 313-318
 (
2014
), published on 
Feb 2, 2014
 DOI: 
10.1038/nmeth.2835
  
  
Design space for complex DNA structures
Bryan Wei, Mingjie Dai, Cameron Myhrvold, Yonggang Ke, Ralf Jungmann, Peng Yin
Journal of the American Chemical Society
135, 18080-18088
 (
2013
), published on 
Nov 20, 2013
 DOI: 
10.1021/ja4062294
  
  
Isothermal self-assembly of complex DNA structures under diverse and biocompatible conditions
Cameron Myhrvold, Mingjie Dai, Pamela A Silver, Peng Yin
Nano Letters
13, 4242-4248
 (
2013
), published on 
Aug 26, 2013
 DOI: 
10.1021/nl4019512
  
  
Complex shapes self-assembled from single-stranded DNA tilesa
Bryan Wei, Mingjie Dai, Peng Yin
Nature
485, 623-626
 (
2012
), published on 
May 30, 2012
 DOI: 
10.1038/nature11075
  
  
Active process mediates species-specific tuning of Drosophila ears
Olena Riabinina, Mingjie Dai, Thomas Duke, Jörg T Albert
Current Biology
21, 658-664
 (
2011
), published on 
Apr 26, 2011
 DOI: 
10.1016/j.cub.2011.03.001
  
  
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